Issues with TypeScript: outFile in tsconfig not functioning as expected

Currently, I am utilizing Atom as my primary development environment for a project involving AngularJs 2 and typescript. To support typescript, I have integrated the atom-typescript plugin into Atom. However, I noticed that Atom is generating separate .js files for each .ts file. My objective is to consolidate all .ts files into a single .js file. In an attempt to achieve this, I added the outFile setting within the compilerOptions section of the tsconfig.json file as shown below:

{
  "compilerOptions": {
    "target": "ES5",
    "module": "system",
    "moduleResolution": "node",
    "sourceMap": false,
    "emitDecoratorMetadata": true,
    "experimentalDecorators": true,
    "removeComments": false,
    "noImplicitAny": false,
    "outFile": "./js/Deployment/single.js"
  },
  "exclude": [
    "node_modules"
  ]
}

Despite having configured the tsconfig.json file accordingly, when I compile the project, an empty single.js file is generated at the specified location. This has left me puzzled as to what I might be overlooking in this configuration setup. For reference, I am using version 8.2.0 of the atom-typescript plugin.

Additionally, here is a snippet of my package.json file:

{
  "name": "Pro1",
  "version": "1.0.0",
  "scripts": {
    "tsc": "tsc",
    "tsc:w": "tsc -w",
    "lite": "lite-server",
    "start": "concurrent \"npm run tsc:w\" \"npm run lite\" "
  },
  "license": "ISC",
  "dependencies": {
    "angular2": "2.0.0-beta.0",
    "es6-promise": "^3.0.2",
    "es6-shim": "^0.33.3",
    "reflect-metadata": "0.1.2",
    "rxjs": "5.0.0-beta.0",
    "systemjs": "0.19.6",
    "zone.js": "0.5.10"
  },
  "devDependencies": {
    "concurrently": "^1.0.0",
    "lite-server": "^1.3.1",
    "typescript": "^1.7.3"
  }
}

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